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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022933 Open in IMG/M |
| Scaffold ID | Ga0233427_10000299 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 64573 |
| Total Scaffold Genes | 116 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 70 (60.34%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001235 | Metagenome / Metatranscriptome | 741 | Y |
| F007003 | Metagenome / Metatranscriptome | 360 | Y |
| F016619 | Metagenome / Metatranscriptome | 246 | Y |
| F040325 | Metagenome / Metatranscriptome | 162 | Y |
| F042629 | Metagenome | 158 | Y |
| F045428 | Metagenome / Metatranscriptome | 153 | Y |
| F047713 | Metagenome | 149 | N |
| F056888 | Metagenome / Metatranscriptome | 137 | N |
| F079216 | Metagenome / Metatranscriptome | 116 | Y |
| F087902 | Metagenome | 110 | N |
| F092887 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233427_100002991 | F045428 | N/A | MTKQIIALVALLSLGAFSAVYAETATVEVPFDSHGQSCHFDQFAVEFHCVWQGVGEKFTYEDLEEFKDLLDETIYDEELRKLNEHALAEIAAEKAKLTPNELVILEIENKLNRGIATATDSVYMNLLKELDTCQQGMDKQTAPFQNAREFEISEFTMWKVNNVKYDGKLGEIVMAIEECRAQHALKKVVGEGYSNMPTGDDDVQFSLLVEYEGIQALNFDDHTATHRNIDESLICGNSQFPLTHQAQFGCEVLYDGKTLEQIKLENELKFGTDGMIGSHNKVLDDYFDFLKSSNFRYATVEDKLYEQSIAEPIIKNMIESNNFVQNQLKNE |
| Ga0233427_10000299108 | F001235 | N/A | LPTELNTNENANDMTKKLWEKHQGDEFTAVNNYKEGVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKICDKYYGLCFFCNKYKFNIEQINGRFCSTCHRRIANITKEYNKKGGFMKTDPFWVSMRKKHGKDWKQIMGGYRKSNRK |
| Ga0233427_100002993 | F016619 | N/A | MAITIAHNADHKSLTGKTLSIQSELTSKLKSTIVDVTYGASDNYATNGNTVDLSLGGRISTVIGAEILHCDKGLLLQYAPAAAGAAATGKIKAYGHTPTSSTATVVALEELDASDTAVNSMTIRIRVIGF |
| Ga0233427_1000029936 | F040325 | N/A | MARRKIGNSHTTICVSWEDKELFRKFAKFVKTTRTGKLYESDAVLFNKMLLFFKESNPVGEVSNTTYPTKNQEPTQLR |
| Ga0233427_1000029937 | F007003 | N/A | MIHFFTKNIDEKKYRDIIQRIIMINGNDGTNLSGYNAWKNFEENWELNIIPVTDQEDFKSYYKHLNVETSDGIAWGVTGVRVIYMFVNDVKNPFIIRQNIMPLGHELLHAIYQEAVGTFHITRIYNAPEGRANTRGAAATVIVHDNWYGSKDTIKVWIRWGLIWLPITIPFIPVKKAKETYPI |
| Ga0233427_1000029939 | F056888 | N/A | MNVSEVLDIDGSVERSKKLVAGDKITIQGFKIKNVDEVGAEVAEISTTEGLRHSFGKTVIGQAKSDYWKDVVAKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN |
| Ga0233427_100002994 | F087902 | N/A | MTYTNHNVKDVSADGAVKAGHGVIVSVHVVKAGASGDKIVFHNGDANSDPAEFTVYGEGIQNIQDIMRRFEDGIFAEVTGTTARYLVVFK |
| Ga0233427_1000029944 | F092887 | AGGA | MVISKPIRRNKKTSKSVVVIQLPRRISTHDRIINVLKDYKNGLPLNEIHYKSQIPSLGNLHHTVKFMVRAGEIKQYTCDKCCSTELYKLI |
| Ga0233427_1000029951 | F047713 | GAGG | MEIIGQGEVAALEIIKDMFGNSCEYLTQVKLSDMVTPEYLETFSDRQLKETIDIVVDTGFQYLAIRVQDKHHVSARMATIDNIQKKMLEWNGWKVIDIWHYECKELWKDKVNEKSRLELENAIKESSID |
| Ga0233427_1000029953 | F079216 | GGA | MTVCDKCGHGMLLHGCVGNKGYCSEGNGNWCECTEKGKTYEEEISDLQHERIMS |
| Ga0233427_100002997 | F042629 | N/A | MTIITYDAVDDIISLIKTKWSNLRPPTISKVWDKRTVGFIDDRSDQVILSPKGEEIQYFGLGGSAFWHNQIVEMEIRTYQDIKRHNSVVKEIVKIIKDNITGTNYTDLRVIGSFSKNFAYRNMYSYVVTISYRKSDPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |