NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000011

Scaffold Ga0224558_1000011


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000011 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)247018
Total Scaffold Genes201 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)131 (65.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000372Metagenome / Metatranscriptome1220Y
F000985Metagenome / Metatranscriptome813Y
F010830Metagenome / Metatranscriptome298Y
F061167Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_1000011197F061167AGGAGGMKILYFDPESVHGKYIKILRQRGHDVATASSCADAFAMMRRQVFDVLVMDCAQDTLDILNFTAKAHGLQPLLAVFLGDEWGDELVTGLEELRNVLTMLEDDECARLAVEGRMA
Ga0224558_100001140F000372GAGGVTGPSAGTARRWTVIAAGLLILALALVVIYTGPRAFVSPIALVVVAAIGVAALLLQVRFRGDLPSSRSSLWLNVAGVLFAAGSLSGDFARMPRSKLDAMAFGAVGCFGISGALILHGLRRHVRDVADLPKSE
Ga0224558_100001152F000985AGGTGGMKNVFEVLRQKELELARLEKEVEALRLAAPLLAEDKEQAEAPKPTLTTSPQQPIRMSSPVAAQAVNAPARAAGWEDAAKRWP
Ga0224558_100001190F010830GAGGMLSKLLQIVALTTCLTPAWCKPTSELSFIPQPSTVFIVGPGTVLSVHLLDLPFVKQHYAVKYKTDGGELIEVWTPGKDVLVLEGMHGILTYSTHPEKILSFRVVEKSSQRSGQVVPAPLR
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