NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0224558_1003502

Scaffold Ga0224558_1003502


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1003502 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13006
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F006399Metagenome / Metatranscriptome374Y
F017708Metagenome239Y
F017965Metagenome / Metatranscriptome237Y
F036885Metagenome169Y
F046588Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_100350210F001596AGGAGMSWFHSSTAAAVVARNYASPAEIVGCFQDQRNVLSRLALLITGDQATADQAVVHACKITLQGNSPFRDWLLEWTKAATIASAISHGMEAIRICEATYTDRRCQHAEHLSQGDAEERAASLDLILETDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAMTWLHAGPVKSVEENHDASHAV
Ga0224558_100350212F036885GGAGVLDIPCSDKRVGAKAMSKKKDRERVIAEITLSHLMRLENKEGCPVSREQALAFLNQEGQAFEMWKHMMQAAENFIACSLLRHSLSPRGHHGFAPQSSLLRSISTAAR
Ga0224558_100350214F046588GAGMTYIPTQAGFMRLEDSETLLRVIFPNYPSLEPCHSAPRLEPIPQGSKDYRNEERMSLC
Ga0224558_100350215F017708AGGAGMARVIEFYIPKNFRKPLRAEAQPQFGKIIEFCPQTKRSA
Ga0224558_10035022F004823AGGAGMYVTKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGQQSEFLLNEQDWEWIRAIDSPFRRAAQHA
Ga0224558_10035024F017708AGGAGMAKVIEFCIPKNFRKPLRAEAQPQLGKIIEFCPQTKRSA
Ga0224558_10035027F017965GAGGMDSKPNSGIALTDMSEKIGHRDASYLFACHLEWITKRNLAAYQELLAALDDHDGDIRRLAESLLHRSTPRPKRTATGIESW
Ga0224558_10035028F006399GGAMATPALNSRVQSLVTEYGVFWQFWPQFEQTDGERRLVGFEVELIGSHRSDLNHVDPACPICRHVRSVLLAIADLMPGELTFSRNYLTYNIDSHSNSIVWLPALGNRSAVWVSIYVFLNRANGQSFETDLLKEVKTFLNRWGIHQR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.