NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256748_1093791

Scaffold Ga0256748_1093791


Overview

Basic Information
Taxon OID3300023313 Open in IMG/M
Scaffold IDGa0256748_1093791 Open in IMG/M
Source Dataset NameHydrothermal Fe-rich mat microbial community from Urashima Vent Field, Mariana Arc, Pacific Ocean - 801-BM1-B4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Delaware
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)846
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Source Dataset Sampling Location
Location NameInternational: Urashima Vent Field, Mariana Arc
CoordinatesLat. (o)12.92235Long. (o)143.64925Alt. (m)Depth (m)2929.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002963Metagenome / Metatranscriptome517Y
F011673Metagenome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0256748_10937913F002963GGAGMNYNLVLYIGLFLIVGGFCLFLYSQMRLRQLDIEQWKNEQLTKSFNKAKEMENK
Ga0256748_10937914F011673GGAGMKVLPIYLQPRILSAVSYIHVAPNKEIGLERINKVMKELSEREMKYVLSLLVFDKLLDLVADSDEFKNHVSTMKERTIH

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