Scaffold Ga0256748_1132462

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256748_1132462

Scaffold Ga0256748_1132462

Overview

Basic Information
Taxon OID	3300023313 Open in IMG/M
Scaffold ID	Ga0256748_1132462 Open in IMG/M
Source Dataset Name	Hydrothermal Fe-rich mat microbial community from Urashima Vent Field, Mariana Arc, Pacific Ocean - 801-BM1-B4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Delaware
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	715
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Source Dataset Sampling Location
Location Name	International: Urashima Vent Field, Mariana Arc
Coordinates	Lat. (^o)	12.92235	Long. (^o)	143.64925	Alt. (m)		Depth (m)	2929.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003161	Metagenome	504	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256748_11324622	F003161	GAGG	LSRSGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPVLAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGSATVATLDMGGALYRTATITFDIQIYEEVTITP

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