Scaffold Ga0256748_1136928

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256748_1136928

Scaffold Ga0256748_1136928

Overview

Basic Information
Taxon OID	3300023313 Open in IMG/M
Scaffold ID	Ga0256748_1136928 Open in IMG/M
Source Dataset Name	Hydrothermal Fe-rich mat microbial community from Urashima Vent Field, Mariana Arc, Pacific Ocean - 801-BM1-B4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Delaware
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	703
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Source Dataset Sampling Location
Location Name	International: Urashima Vent Field, Mariana Arc
Coordinates	Lat. (^o)	12.92235	Long. (^o)	143.64925	Alt. (m)		Depth (m)	2929.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059000	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256748_11369281	F059000	N/A	PRMLLRSRYAIGELGWYPQKQYMTVHVADPDQILI

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