Basic Information | |
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Taxon OID | 3300023719 Open in IMG/M |
Scaffold ID | Ga0257059_111033 Open in IMG/M |
Source Dataset Name | Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_93C |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of California, Irvine |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2246 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Northridge, California | |||||||
Coordinates | Lat. (o) | 34.2381 | Long. (o) | -118.5301 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F102166 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0257059_1110333 | F102166 | N/A | PEMRVFVMKKLLSLLLVLALALVPMLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV |
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