NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000449

Scaffold Ga0255147_1000449


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000449 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11871
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004306Metagenome / Metatranscriptome444Y
F005630Metagenome / Metatranscriptome394N
F036701Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100044927F004306N/AMSLAQREVWDKNINKKEMNSKHIEIIRFDNSKISIKEYVGDRVLQPVTYQPAIIKMIGARLLVINPDNQEEYYDCRYEDCTIKRMNG
Ga0255147_10004494F005630N/AMNLYEVNGFYGTRNRGTILVYERNNGKRWYCVEGSCNINCTYDEIVEGTNVETLSDIDTMSSREGIYSTRELYDFVIS
Ga0255147_10004498F036701N/AMDGLTFILVWILLSFPIVRMVNRRMEENDDKVRFVTAFQIFLFVRAQFEVPRYYLVQLIKLLK
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