NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233398_1001597

Scaffold Ga0233398_1001597


Overview

Basic Information
Taxon OID3300024320 Open in IMG/M
Scaffold IDGa0233398_1001597 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 38D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8514
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033035Metagenome178N
F099271Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0233398_100159712F099271N/AMEPKETTPLDAMVAGLNLLYDAMESPPAPPADEDEETETKESKWIH
Ga0233398_10015978F033035N/AMNEASIWAEHGGLIGLIIFSLFGLIATFIVVLTRKDKASQTFIKEILENDRQDRKEDRADHRVTFDRLGNALDSLTNELRKRGD

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