NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10021890

Scaffold Ga0244775_10021890


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10021890 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5807
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035317Metagenome / Metatranscriptome172N
F049627Metagenome / Metatranscriptome146N
F072745Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1002189010F035317N/AMEFDIICVTRKQITMTEMKLYMQRCEEMRNQAMAERHAEATDEFGFCSGTTYKEWTAKTGMKGVSRKGKTFSHTKLWDYRG
Ga0244775_100218905F072745GAGMITFKQFFNDNANHHSFVKYGTNFGRLTYEQMEQIEYEMGIDYDDYRNEHV
Ga0244775_100218908F049627N/AMKKILPLLIAGSLASCASNSQLFEVTHVICESDSTVDVWSSNAFVRTDIQVTSDSIHFFEAIGEFNKMIKTESIDYTNVLDITDSTLTIQQPDQVTTYMLFDLQNHYE
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