NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10123727

Scaffold Ga0244775_10123727


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10123727 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2190
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053301Metagenome / Metatranscriptome141N
F054860Metagenome139N
F100477Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101237272F100477N/AVKDKIFQQKNWQAKMKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKSLENLTSKVDWFVIDVV
Ga0244775_101237273F053301AGGAGGMTVKEVIQMLEQIAEKEGYLTECIVEIEEENYNTEAEIHTVCTNGYQDGTKKICLLGTKDIEADEE
Ga0244775_101237275F054860N/AVAFNALLCNEKIPFAEVSNDGRGGENRYRPLGDSMDWIFNHALVTAFREWCSNQPPVYDKESGNTYNFSADLYVNDCLIQETGSQQELVVSL
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