NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196962_10002066

Scaffold Ga0196962_10002066


Overview

Basic Information
Taxon OID3300024430 Open in IMG/M
Scaffold IDGa0196962_10002066 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6565
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043687Metagenome / Metatranscriptome156Y
F055487Metagenome138N
F074494Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0196962_1000206610F074494AGGAGLIDAVTQQRPCQVRSRTQSPCLHQAVVEIRGIPFCEACAREQEAYFAIGELTQEETRDLRGEPLSKSLGETLGEMLDGMRRQRTVDLAAAKRLDLPRVDKPGSLRLRKARQSQPENRQNRGRRANGVEQLSEDAQVLIRAAREIHVERHGAKTFLPGTRLSFLEAAKRTGIRSDRQRYYD
Ga0196962_100020666F043687AGGCGGMAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVRDEWAESQERR
Ga0196962_100020669F055487GAGMASDDFRPRSGSMAEYADKGESMAEQIPEAWIGQEVTVYFGLEGYRQPGILESVSERGIVVQSGQGGAEEHVFWYPHTSVLRLMRGKPRGAEVRSF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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