NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233337_1022599

Scaffold Ga0233337_1022599


Overview

Basic Information
Taxon OID3300024489 Open in IMG/M
Scaffold IDGa0233337_1022599 Open in IMG/M
Source Dataset NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-229
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)583
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F106076Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0233337_10225991F106076N/ANAPSLIVKEETVYSTPXRAVNIIAKKTVATKPYKAPLLFPCIIEWXAYVTVTPDDNNITVFNKGSSKGLTASIPIGGHXAPNSTVGDNALXKNAQNIPKKNKASDIINKATPMFNPLXTANVXLPKYVPSLITSRHQNDIDKIRDIRDNVNIVPAPEKLXNVDTALVVSDNSERQVNKGQTEGETRXKGXAX
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