Scaffold Ga0208669

Basic Information
Taxon OID	3300025099 Open in IMG/M
Scaffold ID	Ga0208669_1000626 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025099 Open in IMG/M

Scaffold ID

Ga0208669_1000626 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13831
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (42.31%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13831

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (42.31%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-16.21

Long. (^o)

-76.63

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F040325	Metagenome / Metatranscriptome	162	Y
F047713	Metagenome	149	N
F056888	Metagenome / Metatranscriptome	137	N
F079216	Metagenome / Metatranscriptome	116	Y
F081895	Metagenome / Metatranscriptome	114	Y
F092887	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100062611	F092887	AGGA	MVISKPIRRNKKTSKSVVVIQPPRRISTHDRIINVLKDYKNGLPLNEIHYKSQIPSLGNLHHTVKFMVRAGEIKQYTCDKCCSTELYKLI
Ga0208669_100062617	F047713	AGGAG	MEIIGQGEVAALEIIKDMFGNSCEYLTQVKLSDMVTPEYLDTFSDRQLKETIDIVVDTGFQYLAIRVQDKHHASARMATIDNIQKLMLEWNGWKVIDIWHYECKELWKDKVNEKSRLELENAIKESSID
Ga0208669_100062619	F079216	GGA	MTVCDKCGHGMLLHGCVDNKGYCSEGNGDWCECTEKGKTYEEEISDLQHERIMS
Ga0208669_100062623	F081895	N/A	VKVIKRVKKLESILFININLETDKELEERHKKGVLMHYLRALEKLMVDQR
Ga0208669_10006263	F040325	N/A	MARRKIGNSHTTICVSWEDKELFRKFAKFVKTTRTGKLYESDAVLFNKMLLFFKESNAVGEVSNTTYPTKNQEPTQPR
Ga0208669_10006264	F007003	N/A	MLLITWLTMIHFFTKNIDEKKYRDIIQRIVMINGNDGTNLSGYNAWKNFEENWELNIIPVTDQEDFKSYYKHLNVETSDGIAWGVTGVRVIYMFVNDVKNPFIIRQNIMPLGHELLHAIYQEAVGTFHITRIYNAPEGRANTRGAAATVIVHDNWYGSKDTIKVWIRWGLIWLPITIPFIPVKKAKETYPI
Ga0208669_10006266	F056888	N/A	MNVSEVLDIDGSVERSKKLVAGDKITIQGFKIKNVDEVGAEVAEISTTEGLRHSFGKTIIGQAKSDYWKDVVAKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208669_1000626

Overview

Ecosystem & Geography

Associated Families

Sequences