Scaffold Ga0209082_1242721

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209082_1242721

Scaffold Ga0209082_1242721

Overview

Basic Information
Taxon OID	3300025123 Open in IMG/M
Scaffold ID	Ga0209082_1242721 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	536
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Cold Creek Source, Nevada
Coordinates	Lat. (^o)	36.41	Long. (^o)	-115.74	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059781	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209082_12427211	F059781	GAG	VHPSERVRIVTETARAVLEERLDASVGAQTLALQQEQIAGRLRSDRIDVTQSEADVVALTLRRLAEQVADLVPSDPDPAYVEMARILGELAQTLR

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