NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209348_1003732

Scaffold Ga0209348_1003732


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1003732 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6839
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024809Metagenome204Y
F025520Metagenome201Y
F038719Metagenome165Y
F058913Metagenome134Y
F062820Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100373213F062820GAGGMTTSTWKHIDMGSICVHCGKDTAFGHSDMLFVDRISADTDLLDDDGKPIGTKEGYMCRECQFVDDDDFFHINNLID
Ga0209348_100373217F058913AGGAGGMKLTKEEARWLDDKWNDFYYYFQVEDMFEKDQELFRSIGKKLSEIK
Ga0209348_100373221F038719AGGAGGMDSKTREKILHRCEILRYMGDDGIPCIFDELPDDELMEDCGWVLDKAHDDLDQYQFQVTRKIINEAPKRATSKDMWS
Ga0209348_100373223F024809AGGMNYSQKVLFDDWISKCPIDNVQVQEPVSMVRTEFGKWDYLIKVYLTIDKEDWEQNQTPPGFSENLPSQDRLEGQ
Ga0209348_10037327F025520GGAGGMSFEENFYILNCHSYIKKIPNTYLCADFLKDLENLDGTLKPHISDLKKDVTSYGMPSIKCTIPTLFIEIEYKTSDGHYLITREVFLYEEDYPTLKDLEAYKDKVSYGFASQVTQEIKDIVEAFHNGYGCMCLSSGDY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.