NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1011083

Scaffold Ga0209348_1011083


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1011083 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3607
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025520Metagenome201Y
F036270Metagenome170Y
F058913Metagenome134Y
F080142Metagenome115Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_101108314F025520N/AMAIYEDYYVINSTSHIKSVPTFLCTSFLKELKNSDGTLKPHISELDTNATYCGKPCIKVTLPTCFIEIEYKTSDGHYLISREVFLYEEDYPNMEALEALKEATSYGFASQVSEVVNETIDTHHNSQGCMCLSYGDY
Ga0209348_10110832F080142GGAGGMKVKAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNEFKNEVWSYNDALQKIKNLVQQVGDN
Ga0209348_10110833F058913GGAGGMKLTNEEARWLDNKWNDFYYYFQVEDMFEKDKELFRSIGKKLSEVKQ
Ga0209348_10110835F036270GGAGGMHIESTNKQGVFRACKEGHKLLELINDMGWDYDRFSSSGQETYDKICTIIGTVEEKK
Ga0209348_10110838F089953GGAGMEDLINEEILENIHEGYEIYKVTLDDNVEIVIKYAIRERSCFADQDLKLVRHNDMSFFSTLEDAEQALSEIVQKRFEEQSQ
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