NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1037603

Scaffold Ga0209348_1037603


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1037603 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1696
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036270Metagenome170Y
F058913Metagenome134Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10376032F058913AGGAGGMELSKEEARWLDDKWNDFYYYFQVEDMFEKDKELFRSIGKKLSEVKQ
Ga0209348_10376033F036270AGGAGGMYIENTHKQAEFRGDPDGHKLLELIDLMGFDYDRFSSSGQQTYDQICTILATVKEVEDGT
Ga0209348_10376036F089953GGAGMEDLINEEILENIHEGYEIYKVTLDVVFEDLNGRVQNVPDYEDEVIKYAIRERSCFADQDLKLVKHNDMVYFPTLEDAREALSEIVQKRFEEQSQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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