NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209128_1001871

Scaffold Ga0209128_1001871


Overview

Basic Information
Taxon OID3300025131 Open in IMG/M
Scaffold IDGa0209128_1001871 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13981
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (92.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104972Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209128_10018712F104972AGGAGMKISECCGAKLTNYDKNWDDGICIECKEHSPAINEEVKELRMEIQK

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