NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209108_10088741

Scaffold Ga0209108_10088741


Overview

Basic Information
Taxon OID3300025165 Open in IMG/M
Scaffold IDGa0209108_10088741 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - sediment 10ft 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1676
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012520Metagenome / Metatranscriptome280N
F048660Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209108_100887413F048660GGAGMKRASIGLGILVTFFILAMFLMADAEVTPLDDSAVVSTSAPAR
Ga0209108_100887414F012520N/AMPSVTDSSLWGLVLLAGWIVGAIFVGIVGGATRGVQGFFVWLLAALLFSPLLAILGLIAVLLGDLVREVEIKAIHGSPDLPTRSSSGRFAHLAGDD

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