Scaffold Ga0209341_10411487

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209341_10411487

Scaffold Ga0209341_10411487

Overview

Basic Information
Taxon OID	3300025325 Open in IMG/M
Scaffold ID	Ga0209341_10411487 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1094
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004347	Metagenome / Metatranscriptome	442	Y
F065149	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209341_104114872	F004347	AGG	VQPETARWLNESRGSFGAAQSRFNDISSMDVTGAGALFRSAEYAVKAVIVEHYGFLPPSFKTHHRIVNLSHLIGLWSRLPPDLRAHLADLAPLDPNVLYPRETRPRDPPRTYETLVSSSSNAEWQQRLTTAPRFIQYIEHDVIGNPAAFGKLTF
Ga0209341_104114873	F065149	N/A	AVVLARNAEGRAIRSQPLRLPEPVVEEGSSADYYADGALVVTLRKQATAQDAGPTGDPEAPAR

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