NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208383_1013396

Scaffold Ga0208383_1013396


Overview

Basic Information
Taxon OID3300025357 Open in IMG/M
Scaffold IDGa0208383_1013396 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1014
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080791Metagenome114Y
F085373Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0208383_10133961F085373N/ASRAAAVIFIQSERETRLAIGGATNGWKRVDYTVVLQIFHHSLQNNAEDAMADFDTLVDNIKGTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETFAEIRFDVTQMIQA
Ga0208383_10133962F080791AGGAGMATYQYNGDEVKEFPTLGLTVKPGDTFDSADEIISADVTLASAPKKTPTPSAPSDTTVGE

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