NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209557_1001434

Scaffold Ga0209557_1001434


Overview

Basic Information
Taxon OID3300025483 Open in IMG/M
Scaffold IDGa0209557_1001434 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13182
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (65.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024091Metagenome / Metatranscriptome207Y
F051050Metagenome / Metatranscriptome144Y
F101061Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209557_100143411F101061N/AMNDSVDFEDVLEDDDWGLIIDNNGNLKGMFIPEGYDEEEVPTAIIEICIKYFGIDPTEEVTFH
Ga0209557_100143412F024091N/AMDEIQALMESHPRAHLEEGSNIHALMASAGLYFQHMDDENRDYYQFVSTAIEDELEWNV
Ga0209557_100143431F051050AGGALDKNSKIERQVHRWDLYAKAAPTIFLVTGGISLTIGITSFDTLFNIGMILFAFTAVTWWFWTIITVKYIIKTMSSATTNLIEVKQDLKDIRKTLEEERNE
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