NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208356_1004861

Scaffold Ga0208356_1004861


Overview

Basic Information
Taxon OID3300025504 Open in IMG/M
Scaffold IDGa0208356_1004861 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3180
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000328Metagenome / Metatranscriptome1293Y
F066001Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0208356_10048612F000328GGTGGMRVEVSGEAAAFVRARGGKLWVWAAHPRMCCAGTPAYMHAATEAPPDVSGCTHIPWEGLELWFRVPAGALPEVLEIALHGRRRPRIEAYWDGCLFALSA
Ga0208356_10048613F066001AGGAGMTAIARIARRVASVVNEMNYAQRRTTELFLGLDQNRR

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