NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1002718

Scaffold Ga0209654_1002718


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1002718 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11715
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079708Metagenome / Metatranscriptome115N
F080980Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209654_10027182F080980GGAMTGKYLSGISAVLILVGCGEVKVINDQSSPISRVNPMTEVVEVETTVTSVSQLDCLRLIDPLFAETDSITDADRTTFSRATKAHLAPLNYQIDPKCENQFELNVREYKTQEILVASRVIVDIEGGIQDAAGTTLWKASYRLTENAGSVPFDPISIGIGAVSAARNSSEDSKHNAVYLAVRRLLMALPENTALTAMSDESIESPENRSEMERALELWKDGQQSEALKLAESAYTAENRTEVGYQYGLMLEASELDADAADVYSDTAIAQLEAGSFDTALRTLRRLDRLNESNSGMFDSQLSKALEFVKR
Ga0209654_10027187F079708N/ALAIVLAGIMVVVNVITFDYPGVCPSTLARAEFQKDKLFSLLEGEQGHLGTEIRDVVLAIEDQVCPLLGL
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