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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025862 Open in IMG/M |
| Scaffold ID | Ga0209483_1000025 Open in IMG/M |
| Source Dataset Name | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 181857 |
| Total Scaffold Genes | 181 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 124 (68.51%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Barrow Environmental Observatory site, Alaska | |||||||
| Coordinates | Lat. (o) | 71.299 | Long. (o) | -156.61 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F049971 | Metagenome | 146 | Y |
| F082863 | Metagenome | 113 | Y |
| F089073 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209483_1000025127 | F089073 | N/A | VRVLKHPLQAEAFSTTYNGRMDISRRQLAGVILAGTAVAQAPPTPAPQSADAELKAARSERRVAAQIIARVGLPMTVEPAFQFKA |
| Ga0209483_100002524 | F082863 | N/A | MVTVHYRRWCPPQSPLRIEFPPQLLHDVRLQGARPERRLPLRWIPRLNRVVNQTSGLLFGVRRDDEVRVLAAGADRDEENPDGLVPVGTFVCRERGEVFLTDDDLGNFEKYQGLLALVVAGGRAGFFVREPDGSVQAIRSHEEFRVADAASRPVSEATGVVGELPAPVPSLWRAWRRIAACAALLAIPAGAFAYLRPLLPSLPLALTIREDAGQLLIGWNAGALADNSRLEIQDGSERTILMLPAHTSSATYGRHSDDVEVRLLTDSRIGGAHWEAARFVAKAPLPATASSALQDRIRALTLEAEDLRRSLAYGQARTKELAAKLAAVTRER |
| Ga0209483_100002567 | F049971 | AGGAG | VRDIRRYWKEVRALQASLPEFVWLVDVEGSAPVEVTAERAAQLLLAKSHRLASEEELSVQREKEIVAGKQLQRDRRRKEGVVVVGLARGDSQPISGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |