NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207695_10499561

Scaffold Ga0207695_10499561


Overview

Basic Information
Taxon OID3300025913 Open in IMG/M
Scaffold IDGa0207695_10499561 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1098
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089060Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0207695_104995611F089060N/AVSILDPPEQIVAGDAVAVTVSDEPTVTVTEAVPEQPLAFVPVTEYVVVEVGLTVMLAVVWPVLH
Ga0207695_104995612F089060N/AVAPVAVSVLDPPGQIDAGDAVAVTVMDEPTVTVTEAVPEHPLAFVPVTEYVVVEVGLTVMLAVVWPVLH
Ga0207695_104995613F089060N/AVAPVAVSVLDPPGQIEAGDAVAVTAMDEPTVTVTDAVPEHPLAFVPVTEYVVVEVGLTVMLAVVCPVFH
Ga0207695_104995614F089060AGGAVAVSVLDPPGQIDAGDAVAVTAMDEPTVTVTDAVPEQPLEFVPVTEYEVVEVGLTMILAVVSPVFH
Ga0207695_104995615F089060N/AVLDPPEQIVEGDAVAVTFGVGPTETVTETVFEQPLEFVPVTEYEVVEFGLTVMLAVVSPVLH
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