Scaffold Ga0207686_10000017

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207686_10000017

Scaffold Ga0207686_10000017

Overview

Basic Information
Taxon OID	3300025934 Open in IMG/M
Scaffold ID	Ga0207686_10000017 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	195143
Total Scaffold Genes	163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	119 (73.01%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054993	Metagenome	139	Y
F073685	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207686_1000001737	F054993	AGGAG	VRLVRTFSRQGAFLFCLLLLPATVLNVRAGAEDHFSVKEYNEFHEVLHTLQHEALPKKDFQRIRTNAAELVKRGKAIVQVGLPSGTPSKDQEEFRKELKKFEGALGDFSKHAQDGTDAQLEASFSAVHDSFEMLVGMLPRK
Ga0207686_1000001789	F073685	N/A	MRLVTESNNNNVIGFIASTVESLRDDVASMRQEMATKSDVTILRGDIEQVQLRLDTIEHSMSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQTSA

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