NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207667_11669374

Scaffold Ga0207667_11669374


Overview

Basic Information
Taxon OID3300025949 Open in IMG/M
Scaffold IDGa0207667_11669374 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049894Metagenome146N
F058336Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0207667_116693741F049894N/APAAAASRWLAGVSPQLELVLQDGFPQVGVIGAPWARLEVETGAEGRSIQIRPRALRLGDLRLALWSPTFSMALPALPGGAAVTSVEPVAGGFVVRGTLSEWRRSLSREGVERLLAGMRAGNDRIDL
Ga0207667_116693742F058336N/ALQQYVLQVIETGSVSLPHGGSAGGSSPLDQIIQAGFAAFTGALHSALYLSAALLAGAALLSAITLRQRRH

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