NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207641_10094137

Scaffold Ga0207641_10094137


Overview

Basic Information
Taxon OID3300026088 Open in IMG/M
Scaffold IDGa0207641_10094137 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2627
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011108Metagenome / Metatranscriptome295Y
F092793Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0207641_100941373F092793AGGAMSTNIAGDWRLLFDAALFEPNRARLRECIANAKHAIRNRLDALMRDVPPNDRDENERVLSERIALSDALTTLTELHKIVYSRTSSPATKRQDDSAARPQ
Ga0207641_100941374F011108AGGAGVAIKPLPHSIPSNLPPAKLYLDDIHEIFRILTDSNPECEASFIAGQSKCDSLDDLKELRGRATHFVMNISSPRKHQTLELTPSVTRLHIDELGDQLVAWSKYVNVAAVFEKRKLKLKSIVHSLAPLLVAGLCLLTFALWMVPHAAKPLSIYELNRIVAGILLATAVVYYFISSHSIVYLRYPRRVGLGSWLEDHKPEIIVGIICILTGVIATRVVEKVWK
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