NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257180_1013420

Scaffold Ga0257180_1013420


Overview

Basic Information
Taxon OID3300026354 Open in IMG/M
Scaffold IDGa0257180_1013420 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044521Metagenome154Y
F095076Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0257180_10134201F044521AGGAGVEQGLGSSTWWDEAEYRQLGTVNDRALFILDKLIKRDIARFQAAWTVAFPGRLMYEPHQRQPDEVTRGPWLVILTRMGATREETTDILERVGRRW
Ga0257180_10134203F095076GGAGMRHRFGLLGLLLASLAFAAGGCVVAAEPPAVAVVAPAPFVWIGPGYYGGMYYHAYPGPGYYAPHQHHWR

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