NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256780_1048439

Scaffold Ga0256780_1048439


Overview

Basic Information
Taxon OID3300026430 Open in IMG/M
Scaffold IDGa0256780_1048439 Open in IMG/M
Source Dataset NameMetatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0931-MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)836
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Iowa
CoordinatesLat. (o)42.0Long. (o)-93.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064333Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0256780_10484391F064333N/AAWAGLRKAAEALRPQVEPKIRDMVEPIFKAENEIIATMRERVMSVLEPLLKEHVTPHLGKIVSIIKSPMREAFAESCNLFDDKISKWTPNGGEMEKSFRDLDYFAKSYWEMRDALKKTDDMYEPLWLLREIFSDIYPWGLIWKAHNLVYKHTDNAVYTWEQAMLKEKNPELAEPIKRDVIIKYRHDTDIATNKYYAHILKKIVLPPFEAVVHPVAKHLIEPLADAIPQPLREFIDIKQMFEDLYKGILRDSIQIVLRADGPDDAFRSVAISN
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