Basic Information | |
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Taxon OID | 3300026442 Open in IMG/M |
Scaffold ID | Ga0256785_1050450 Open in IMG/M |
Source Dataset Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0936-MT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 855 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Iowa | |||||||
Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F054479 | Metagenome / Metatranscriptome | 139 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0256785_10504501 | F054479 | AGGAG | MRHDMESCDQGGEDRDKTWLDGPVASVKGKLSDDLAPMDRGNGEEQVRSRSMYQ |
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