Scaffold Ga0209648_10161080

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209648_10161080

Scaffold Ga0209648_10161080

Overview

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10161080 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1759
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009891	Metagenome / Metatranscriptome	311	Y
F087672	Metagenome	110	Y
F099398	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_101610801	F087672	AGGA	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLKRRS
Ga0209648_101610803	F009891	AGGAGG	MSIINKPPQHVKREYELEEPVALVVEKYATFIDSTPDHVVNSALKIVLWRDKHFMNWRKQQQQTARKDVPISSTQKSQARA
Ga0209648_101610804	F099398	AGG	MMQKIINSKNLVAFVLAAATGMTLYFRVPFPETNTFLLVMALRSPSAFEA

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