NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209909_100254

Scaffold Ga0209909_100254


Overview

Basic Information
Taxon OID3300026825 Open in IMG/M
Scaffold IDGa0209909_100254 Open in IMG/M
Source Dataset NameCyanobacterial communities from the Joint Genome Institute, California, USA - FECB-22 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58264
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (70.59%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Cyanobacterial → Cyanobacterial Communities From The Joint Genome Institute, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.9313884Long. (o)-122.0239394Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089171Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209909_10025455F089171N/AMSSKSIPLGAQEREILQAIARTTARSGAAVPLSSTQRLRFEMLGLIEDRADGVRLTERGRAVAAAPAEAPPVTRELQPATPRDRRGRRLGLRRRSPF
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