NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209489_101153

Scaffold Ga0209489_101153


Overview

Basic Information
Taxon OID3300027361 Open in IMG/M
Scaffold IDGa0209489_101153 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53682
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (39.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameCalifornia, USA
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026491Metagenome197Y
F027116Metagenome195Y
F072022Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209489_10115311F027116N/AMVVNCDQNSYQIRFYLLNNYKIEMMIEFSDQLSQDNWYLPLVTKVLVINTIRF
Ga0209489_10115326F026491N/AMVINCDQNSHQVKFWSLNNYKIEVMIEFSYQLSQHK
Ga0209489_10115333F072022GAGMTLEEIRIADERMKNSIIEERRTTHISHTVSSPALQHV
Ga0209489_10115339F072022N/AMLEEIRIADERMNNSITEERKITHIPHTVSSPALQHV
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