NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209489_104748

Scaffold Ga0209489_104748


Overview

Basic Information
Taxon OID3300027361 Open in IMG/M
Scaffold IDGa0209489_104748 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24654
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (48.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameCalifornia, USA
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072022Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209489_10474810F072022GAGMMLEEIRITDERMKNSITEERRTHITHTVSSPALQQV
Ga0209489_1047483F072022GAGMMLEEIRITDKRLKNSITEERRTHIPHTVSSPALQQV

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