NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209331_1012561

Scaffold Ga0209331_1012561


Overview

Basic Information
Taxon OID3300027603 Open in IMG/M
Scaffold IDGa0209331_1012561 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2208
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029170Metagenome / Metatranscriptome189Y
F094145Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209331_10125612F029170AGGVQTAVTDSKLEREALEELIGAQALSTDLKTAIVACLSGAESRRWTIAELLGRLNKLGVHCSKPAVAGALAELALEISLCPFLPWSLVEHGTEWSLTPKSDLLELLSGVRKLPGISSGTLTDEHKAVLLVVIGYRRKGGVSKTRIGEILGLEAAPYLEDLRKKELVYSAPGKELNWWRPTPEALLALGLRSGSDIPELKELERWFDSQKSFPTGIEKQANLEPILQKAQTSRLRRRRRELERRASVPRAQELGALPDSGK
Ga0209331_10125613F094145N/AARKGGGFEVKLWDKPVEAPGLALALLYWHTWRERLDRPEQSRLHRKGWAYSDLLFPNSKGEVLGRQAIHDALSRLSVQGEGGVRLTPELIRQAFLQLKA
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