NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000513

Scaffold Ga0209188_1000513


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000513 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37246
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (85.19%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019099Metagenome231Y
F023293Metagenome210Y
F039032Metagenome / Metatranscriptome164N
F052465Metagenome / Metatranscriptome142Y
F057197Metagenome / Metatranscriptome136Y
F073241Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100051316F057197AGGMTDFGAWRYENLVQFAKESTERMNLLNAEIEALNADLKAAINAYRDLLRRDSLGFLETSHTAEAKKTGK
Ga0209188_100051317F052465GGAMVLEMLNHELATEGRASILRRIHQRYNVLRVSRERIELLQQAKQP
Ga0209188_100051319F019099AGGAGMIIKGKFIRDWDKSQISTGYQRPNQFQIITWDMGRIQSWLLGKQPLARTLLEKVIR
Ga0209188_100051321F023293GGAGGMKYGILDDEGRVVRWVWHMPPYPHIVQKIKRQREPKTDISNLPNAPF
Ga0209188_100051325F073241AGGAGGMNLIHIMKDDNGDFEPLDLTPVFYKGNLMCVPHWRIKNTWVAPGGKTYTTAELLALGAKVSLSLLWQRGWVTKMLGRHNPAMLSQESLTNLIKGKANAL
Ga0209188_10005139F039032N/AMMVTLSEVDHKIDAHVDVCAIRYEGIEKETRGIHARIKRLEQILITGGGAIIMMLLTMLLKVH

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