NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209597_1001633

Scaffold Ga0209597_1001633


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1001633 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14538
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005562Metagenome / Metatranscriptome396Y
F059963Metagenome133Y
F065430Metagenome127N
F067739Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100163312F005562AGGAGMSNPNIQIDDEIREMTDEEYAELLASGWTPEPTDE
Ga0209597_10016333F067739GAGGMIQYQVISMYRVGNPRKLTESQASELHTNPSIVMTLLNQDQHLDRYVKVIVDGTVAGYQSYRAGKRVTLQDVS
Ga0209597_10016334F059963AGGAMNPDDRPTSEWMQPIRPMRVLFKADEEHRYYIHVFALRTAGDECEYLTIDGIFIQARSKSVMYAETLIDAQWLRLGE
Ga0209597_10016339F065430GGAGGMNPFKFLASVAFLYFGLVVIFGGDAGNIDPPVVSVPQTVQIVPLSDEQIADRNAEIAQQIEEENATIYDEPVETTTTLVELAEIDPDTKCQEWLPLAVEMGWPNDTKILQTLGRVLFKESRCQAISADSEWFNGHDYGLTQINQIHEEWLAEMGWTLDDMAVPSSNLRFAFLLWNSREEQGLCGWQPWSISC
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.