NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209590_10037827

Scaffold Ga0209590_10037827


Overview

Basic Information
Taxon OID3300027882 Open in IMG/M
Scaffold IDGa0209590_10037827 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2605
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001681Metagenome / Metatranscriptome652Y
F001901Metagenome / Metatranscriptome620Y
F043850Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0209590_100378271F043850N/ASFTFQAQADGQVRLALVGVKEADDAVIVVTKQAATAPRLFRRYAPNVLLWTV
Ga0209590_100378273F001901GAGGMTRRKQPWGEQRGWIVPADGSPPQELPRHMLGHRLISWPGTMPERRPAEPGKYLASKDHYHRHVLNPEGVYVYVPEGRDAESLPESIKNEIRRQVKGQS
Ga0209590_100378274F001681N/ASRHAALIWGRLCGVGSMKTLRLQRDPDGFFLWHPDYAPWIVGRHSLEANPNDRAFFDPHAGDIVWSSRDGMKDYEMDEVAARHLVGELVEMPQCESEREVEDWFLERGFKVEWI
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