NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10190490

Scaffold Ga0209415_10190490


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10190490 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1959
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004823Metagenome / Metatranscriptome422Y
F017708Metagenome239Y
F017965Metagenome / Metatranscriptome237Y
F055156Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_101904901F004823AGGAGMYVTKAVNGVPAIQRDGQSVLNVCHQDWEFADWLCALLNELGDKSELLLNEQDWEWLRAIDSPFRRTV
Ga0209415_101904902F017708AGGAGMAKVIEFYIPKNFRKQLRAVAQPQLGKIIEFCSQTKRSA
Ga0209415_101904903F017965AGGALTDMSEKFGHRDASYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAEYLLHRSSPRPERTCNSYRILVK
Ga0209415_101904904F055156GAGGMFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTEVSYIDSVGEQL
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