Scaffold Ga0256847_1000086

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256847_1000086

Scaffold Ga0256847_1000086

Overview

Basic Information
Taxon OID	3300028031 Open in IMG/M
Scaffold ID	Ga0256847_1000086 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - Teddybear
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	63185
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (7.69%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Source Dataset Sampling Location
Location Name	Pacific Ocean: East Pacific Rise
Coordinates	Lat. (^o)	9.8472	Long. (^o)	-104.2975	Alt. (m)		Depth (m)	2514
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028441	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256847_10000861	F028441	N/A	MTLKQLIKLEDKSKEVWVISPTLHYDIDNKDFSELVSVNLGEKTKYRYIVPATSTVIKNLTAYKKMYDVTEVDIENNFLILPESEFNPFITETAIYDASEACIACAAPALEDSNDVIKFNEETSKGMAKAFKALWKKYKRKNP

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