Scaffold Ga0256847_1177704

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256847_1177704

Scaffold Ga0256847_1177704

Overview

Basic Information
Taxon OID	3300028031 Open in IMG/M
Scaffold ID	Ga0256847_1177704 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - Teddybear
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	717
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Source Dataset Sampling Location
Location Name	Pacific Ocean: East Pacific Rise
Coordinates	Lat. (^o)	9.8472	Long. (^o)	-104.2975	Alt. (m)		Depth (m)	2514
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025751	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256847_11777041	F025751	AGG	MDSETRMWERLYRLLAQDDWDQTVYVYRVDASGKTIKPYLAKWGMHAELLNSLRDDFGSGEYHLMIRQGNTMLFTGAIGVERPLRR

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