NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256351_100874

Scaffold Ga0256351_100874


Overview

Basic Information
Taxon OID3300028118 Open in IMG/M
Scaffold IDGa0256351_100874 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1355
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049019Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0256351_1008741F049019AGGAGMRTSRKLTHVLFAVFTLAIMSMAALAADPGTSLPASSQASDQKQGSLLIYSHYGSVTSNVSANDTRINITNTHVTSSVVVHFFFVSQACNVADFKTELTQSQTYSFLVSDFDPDTVGYIMAVAEAEDGLPIAMNFLIGDLFVKSSTGPFSANLGAIAFAALWDGTNNGNNPNESGFWRIPGGDATTPSVNITFGSAGNYNALPRTLAVDNIPSFAGGDRALLILLTPVQSFVTGGGAVGTLFGLLFDDAEQSQSFQISGGSCQSTNIISDSYPRTAPRFTTVVPAGRTGWMKVYKTSDLGILGSVIVYNIGGRDVNFHGGHNLHHLTLSGTQTATLPVFPFELQ
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