Basic Information | |
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Taxon OID | 3300028381 Open in IMG/M |
Scaffold ID | Ga0268264_10094571 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2584 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002032 | Metagenome | 601 | Y |
F077355 | Metagenome | 117 | Y |
F097432 | Metagenome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0268264_100945711 | F097432 | GAGG | MPTTKHELLDWLMDVPEDAEIGTDGEGSALLAILGTNVHLLEVGHIPNADELYAEAINQAMMERLRRID |
Ga0268264_100945716 | F002032 | GAGG | MPDNTITHTHAKGESPYAIVRLTPSDIEPRDWAFLREWADRLGVSIEILLKRILIAAVIGQLYAERIPEI |
Ga0268264_100945717 | F077355 | GAG | MIDSGRLKAIKVGREWLIDPKDLDAVKDRKVGRPRKSRKSTKK |
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