NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268264_10094571

Scaffold Ga0268264_10094571


Overview

Basic Information
Taxon OID3300028381 Open in IMG/M
Scaffold IDGa0268264_10094571 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2584
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002032Metagenome601Y
F077355Metagenome117Y
F097432Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0268264_100945711F097432GAGGMPTTKHELLDWLMDVPEDAEIGTDGEGSALLAILGTNVHLLEVGHIPNADELYAEAINQAMMERLRRID
Ga0268264_100945716F002032GAGGMPDNTITHTHAKGESPYAIVRLTPSDIEPRDWAFLREWADRLGVSIEILLKRILIAAVIGQLYAERIPEI
Ga0268264_100945717F077355GAGMIDSGRLKAIKVGREWLIDPKDLDAVKDRKVGRPRKSRKSTKK
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