Scaffold Ga0233366_1018608

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233366_1018608

Scaffold Ga0233366_1018608

Overview

Basic Information
Taxon OID	3300028481 Open in IMG/M
Scaffold ID	Ga0233366_1018608 Open in IMG/M
Source Dataset Name	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1940
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.04	Long. (^o)	-122.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104183	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233366_10186082	F104183	GAG	MKKEDFEIQAKDAAKAMNKKKAPSRPETQFIKGALWAWDILSQGHTIEEYEDILRRDVCDRFQIVHPEQWQELLISETATMMADRDGMQADIMTEGRLLEKWDKNRMPYKESNPLYVHLKELQRSIGMQREHLGLSAKSTKKMESPKRGADEKDKLLDTLSEITNV

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