NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307288_10098678

Scaffold Ga0307288_10098678


Overview

Basic Information
Taxon OID3300028778 Open in IMG/M
Scaffold IDGa0307288_10098678 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1062
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043005Metagenome / Metatranscriptome157Y
F065864Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0307288_100986783F043005GGAGGMMSPAPMSLFYLLQLLTLFVSELGSHLAMCVGNDLANSSTRVSPNISQLSSCLVYDWRNVGELFRGQIEFGAEPFFHSSADPLGMAQFKEMMQGV
Ga0307288_100986784F065864N/APSYNGGYYTPEIRDLFLSRGADVERERIFFGNGLRF

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