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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028794 Open in IMG/M |
| Scaffold ID | Ga0307515_10000849 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 70291 |
| Total Scaffold Genes | 72 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (30.56%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Washington | |||||||
| Coordinates | Lat. (o) | 46.6992 | Long. (o) | -120.899 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019765 | Metagenome | 227 | Y |
| F022123 | Metagenome | 215 | Y |
| F036505 | Metagenome | 169 | Y |
| F092994 | Metagenome / Metatranscriptome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307515_1000084933 | F036505 | AGGAG | LKEVLDHFKLTDGRLLGITTDNPLFNYLMTLELQSTLEPSGFWLPAMWNHIPCMANVIQLALGAFMTNLGVKGCTKSWEAHERDEQFGENEYTDIGKSQRLQEESNSRINTVSTMRPGLVQITEKVRISRHFELPETDLHIAENTCCIDYADTWSSKRVH |
| Ga0307515_1000084946 | F092994 | GGA | MDLSAGRRRISAEERPKRFTDGRCLYCGGFNNRAAECAARKKAQRFKAAGAEVKDVETGTGSEESRKE |
| Ga0307515_1000084949 | F022123 | N/A | MRFHDLPDVISPNIRTDSYNRMQEYNSNCTSRTNWFDLARTHSSLSEPEHLNAFESMEGLTNTEVDTLILPVYCWEQSDVPSPWNTYWTEAAAYRGGLELDDPVFGSNWTKYLGAHAGCDCDPEVPCECEGHTCLGTHLTEGHAPAAAATAKPAPVPLVVIEPPTPTPTDIDAYNWHW |
| Ga0307515_1000084956 | F019765 | GGAG | MLQDMDNMEASCDVYVKVGTFNPLEQSKNSLLTVNKMGMVRATILHDLIPGVSLM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |