NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10022224

Scaffold Ga0307515_10022224


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10022224 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11189
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010438Metagenome303Y
F062316Metagenome130Y
F092994Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1002222415F010438GGAGMWNRRPFMSASDLETVSYATRRVAIALAKAPHWQIIETYWNTAMQQNNIWSIAFEARTKEILKE
Ga0307515_100222246F092994AGGAMDLSAGKKRISAEERAKRFADGRCLYCGGFNHRAAECAVRKKAQTFKASGAEVKEVGTKEGSEESGKD
Ga0307515_100222248F062316GGAMTALTSCHDLLDLISTSTLTDHHIRMHQYDSNCTSRTNWFDLAGTPCLVFEPEPLNTFESIETILAASFEEEPLEAYFWEQSTVPSPGNTYWTDAAREGGGLDINDSVFGPHWTRYIGAHSWFPCDPESPCDCEGHNCAGTHSTIGHAAAAATIAKSLGIPLIVVVPPTPTPSEIDAYNWHW
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